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onemap (version 1.0-0)

Software for constructing genetic maps in outcrossing species

Description

Analysis of molecular marker data from non-model systems to simultaneously estimate linkage and linkage phases (genetic map construction)

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Version

Install

install.packages('onemap')

Monthly Downloads

662

Version

1.0-0

License

GPL (>= 2)

Maintainer

Gabriel Alves Margarido

Last Published

April 17th, 2009

Functions in onemap (1.0-0)

rf.2pts

Two-point analysis between genetic markers

compare

Compare all possible orders for a given sequence

try.seq

Try to map a marker into every possible position between markers in a given sequence

onemap-package

Software for constructing genetic maps in outcrossing species

rcd

Rapid Chain Delineation

onemap-internal

Internal onemap functions

rf.graph.table

Plots a pairwise recombination fraction matrix using a color scale.

make.seq

Create a sequence of markers

order.seq

Search for the best order of markers combining compare and try.seq functions

map

Construct the linkage map for a sequence of markers

map_func

Mapping functions Haldane and Kosambi

marker.type

Type of segregation of markers

example_out

Data from a full-sib family derived from two outbred parents

add_drop

Add or Drop Markers From a Sequence

ripple

Compares and displays plausible alternative orders for a given linkage map

set.map.fun

Defines the default mapping function

def.rf.3pts

Three-point analysis of genetic markers

read.outcross

Read data from a segregating full-sib population

group

Assign markers to linkage groups