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onemap (version 1.0-0)
Software for constructing genetic maps in outcrossing species
Description
Analysis of molecular marker data from non-model systems to simultaneously estimate linkage and linkage phases (genetic map construction)
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Install
install.packages('onemap')
Monthly Downloads
579
Version
1.0-0
License
GPL (>= 2)
Maintainer
Gabriel Alves Margarido
Last Published
April 17th, 2009
Functions in onemap (1.0-0)
Search functions
rf.2pts
Two-point analysis between genetic markers
compare
Compare all possible orders for a given sequence
try.seq
Try to map a marker into every possible position between markers in a given sequence
onemap-package
Software for constructing genetic maps in outcrossing species
rcd
Rapid Chain Delineation
onemap-internal
Internal onemap functions
rf.graph.table
Plots a pairwise recombination fraction matrix using a color scale.
make.seq
Create a sequence of markers
order.seq
Search for the best order of markers combining compare and try.seq functions
map
Construct the linkage map for a sequence of markers
map_func
Mapping functions Haldane and Kosambi
marker.type
Type of segregation of markers
example_out
Data from a full-sib family derived from two outbred parents
add_drop
Add or Drop Markers From a Sequence
ripple
Compares and displays plausible alternative orders for a given linkage map
set.map.fun
Defines the default mapping function
def.rf.3pts
Three-point analysis of genetic markers
read.outcross
Read data from a segregating full-sib population
group
Assign markers to linkage groups