Informs the type of segregation of all markers from an object of class
sequence, according to the notation by Wu et al., 2002.
Usage
marker.type(w)
Arguments
w
an object of class sequence.
Value
Nothing is returned. Segregation types of all markers in the
sequence are displayed on the screen, according the above table.
Details
The segregation types are (Wu et al., 2002):
lcc{
Type Cross Segregation
A.1 ab x cd 1:1:1:1
A.2 ab x ac 1:1:1:1
A.3 ab x co 1:1:1:1
A.4 ao x bo 1:1:1:1
B1.5 ab x ao 1:2:1
B2.6 ao x ab 1:2:1
B3.7 ab x ab 1:2:1
C8 ao x ao 3:1
D1.9 ab x cc 1:1
D1.10 ab x aa 1:1
D1.11 ab x oo 1:1
D1.12 bo x aa 1:1
D1.13 ao x oo 1:1
D2.14 cc x ab 1:1
D2.15 aa x ab 1:1
D2.16 oo x ab 1:1
D2.17 aa x bo 1:1
D2.18 oo x ao 1:1
}
References
Wu, R., Ma, C.-X., Painter, I. and Zeng, Z.-B. (2002) Simultaneous
maximum likelihood estimation of linkage and linkage phases in
outcrossing species. Theoretical Population Biology 61: 349-363.
data(example_out)
twopts <- rf.2pts(example_out)
markers.ex <- make.seq(twopts,c(3,6,8,12,16,25))
marker.type(markers.ex) # segregation type for some markers