opalr (version 1.4.1)

harmo.annotate.status: Set variable annotation with Harmonization Status term

Description

Apply or remove an harmonization status annotation from a set of variables. The harmonization status is described by the "status" vocabulary in the "Mlstr_harmo" taxonomy.

Usage

harmo.annotate.status(tibble, variables = NULL, status)

Arguments

tibble

Tibble to be annotated.

variables

A character vector of variable names to be annotated. If NULL or empty, all the columns of the tibble will be annotated.

status

The harmonization status to apply: 'complete', 'undetermined' or 'impossible'. If NULL, the annotation will be deleted.

Value

The annotated tibble

Examples

# NOT RUN {
o <- opal.login('administrator','password','https://opal-demo.obiba.org')
cqx <- harmo.table_get(o, "CPTP", "Cag_coreqx")
cqx <- harmo.annotate.status(cqx, 
  variables = c("A_SDC_EDU_LEVEL", "A_SDC_EDU_LEVEL_AGE"), 
  status = "complete")
opal.logout(o)
# }