plot.openCR: Plot Estimates

Description

Session-specific estimates of the chosen parameter are plotted.

Usage

# S3 method for openCR
plot (x, par = "phi", newdata = NULL, add = FALSE, xoffset = 0, ylim = NULL, 
    useintervals = TRUE, CI = TRUE, intermediate.x = TRUE, alpha = 0.05, stratum = 1, ...)

Value

The x coordinates (including xoffset) are returned invisibly.

Arguments

x: openCR object from openCR.fit
par: character names of parameter to plot
newdata: dataframe of predictor values for predict (optional)
add: logical; if TRUE then points are added to an existing plot
xoffset: numeric offset to be added to all x values
ylim: numeric vector of limits on y-axis
useintervals: logical; if TRUE then x values are spaced according to the intervals attribute
CI: logical; if TRUE then 1-alpha confidence intervals are plotted
intermediate.x: logical; if TRUE then turnover parameters are plotted at the mid point on the x axis of the interval to which they relate
alpha: numeric confidence level default (alpha = 0.05) is 95% interval
stratum: numeric; stratum to plot if more than one
...: other arguments passed to plot, points and segments

Details

If ylim is not provided it is set automatically.

For customization you may wish to prepare a base plot with plot(... , type = 'n') and use add = TRUE.

Examples

Run this code


if (FALSE) {

fit <- openCR.fit(join(ovenCH), type='CJS', model = phi~session)
plot(fit,'phi', pch = 16, cex=1.3, yl=c(0,1))

}