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oposSOM (version 1.10.0)

Comprehensive analysis of transciptome data

Description

This package translates microarray expression data into metadata of reduced dimension. It provides various sample-centered and group-centered visualizations, sample similarity analyses and functional enrichment analyses. The underlying SOM algorithm combines feature clustering, multidimensional scaling and dimension reduction, along with strong visualization capabilities. It enables extraction and description of functional expression modules inherent in the data.

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Version

Monthly Downloads

9

Version

1.10.0

License

GPL (>=2)

Maintainer

Henry LoefflerWirth

Last Published

February 15th, 2017

Functions in oposSOM (1.10.0)

opossom.genesets

Additional literature genesets
opossom.tissues

Example data set.
oposSOM-package

Comprehensive analysis of transciptome data
opossom.run

Execute the oposSOM pipeline.
opossom.new

Initialize the oposSOM pipeline.