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oro.nifti (version 0.4.3)

Rigorous - NIfTI+ANALYZE+AFNI Input / Output

Description

Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats. This package is part of the Rigorous Analytics bundle.

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Version

Install

install.packages('oro.nifti')

Monthly Downloads

2,178

Version

0.4.3

License

BSD_3_clause + file LICENSE

Maintainer

Brandon Whitcher

Last Published

January 18th, 2015

Functions in oro.nifti (0.4.3)

hotmetal

Hot Metal Color Table
is.afni

is.afni
nifti-class

Class "nifti"
aux.file-methods

Extract or Replace NIfTI/Analyze Auxiliary File
descrip-methods

Extract or Replace NIfTI/Analyze Description
anlz-class

Class "anlz"
image-methods

Methods for Function `image'
niftiExtension-class

Class "niftiExtension"
Bitwise Conversion Subroutines

Bitwise Conversion Subroutines
niftiAuditTrail-class

Class "niftiAuditTrail"
cal.min-methods

Extract or Replace NIfTI/Analyze Min or Max Values
Audit Trails

Facilitate the Creation and Modification of Audit Trails
[<--methods

~~ Methods for Function [<- in Package 'base' ~~
afni-class

Class "afni"
audit.trail-methods

Extract or Replace NIfTI Audit Trail
anlz

Constructor for Analyze
performPermutation

performPermutation
rmniigz

Remove File Extensions Around the NIfTI/ANALYZE Formats
readANALYZE

readANALYZE
orthographic-methods

Methods for Function `orthographic' in Package `dcemriS4'
overlay-methods

Methods for Function overlay
nifti

Constructor for NIfTI
readNIfTI

readNIfTI
Convert NIfTI Codes

Convert NIfTI Codes
writeAFNI-methods

writeAFNI
convert.scene

Convert AFNI data codes
orientation-methods

Extract NIfTI 3D Image Orientation
translateCoordinate

translateCoordinate
pixdim-methods

Extract or Replace NIfTI/Analyze Pixel Dimensions
quaternion2rotation

Convert Quaternion into a Rotation Matrix
Convert ANALYZE Codes

Convert NIfTI Codes
Dimension Accessor Functions

Dimension Accessor Functions
writeANALYZE-methods

writeANALYZE
tim.colors

Tim's Useful Color Table
integerTranslation

integerTranslation
writeNIfTI-methods

writeNIfTI
coerce-methods

Force an Object to Belong to the ANALYZE or NIfTI Class
niftiExtensionSection-class

Class "niftiExtensionSection"
readAFNI

readAFNI
as.anlz/nifti

as.nifti
reorient

reorient