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oro.nifti (version 0.4.3)

image-methods: Methods for Function `image'

Description

Produce lightbox layout of images for nifti, anlz and afni objects.

Usage

## S3 method for class 'nifti':
image(x, z=1, w=1, col=gray(0:64/64),
      plane=c("axial", "coronal", "sagittal"),
      plot.type=c("multiple","single"), zlim=NULL, xlab="",
      ylab="", axes=FALSE, oma=rep(0,4), mar=rep(0,4),
      bg="black", ...)

Arguments

x
is an object of class nifti or similar.
z
is the slice to be displayed (ignored when plot.type = "multiple").
w
is the time point to be displayed (4D arrays only).
col
is grayscale (by default).
plane
is the plane of acquisition to be displayed (choices are axial, coronal, sagittal).
plot.type
allows the choice between all slices being displayed, in a matrix (left-to-right, top-to-bottom), or a single slice.
zlim
is set to NULL by default and utilizes the internal image range.
xlab
is set to since all margins are set to zero.
ylab
is set to since all margins are set to zero.
axes
is set to FALSE since all margins are set to zero.
oma
is the size of the outer margins in the par function.
mar
is the number of lines of margin in the par function.
bg
is the background color in the par function.
...
other arguments to the image function may be provided here.

Details

Uses the S3 generic function image, with medical-image friendly settings, to display nifti, anlz and afni class objects in a lightbox layout.

See Also

orthographic-methods, overlay-methods