pRoloc (version 1.12.3)

addLegend: Adds a legend

Description

Adds a legend to a plot2D figure.

Usage

addLegend(object, fcol = "markers", where = c("other", "bottomright",
  "bottom", "bottomleft", "left", "topleft", "top", "topright", "right",
  "center"), col, bty = "n", ...)

Arguments

object

An instance of class MSnSet

fcol

Feature meta-data label (fData column name) defining the groups to be differentiated using different colours. Default is markers.

where

One of "other", "bottomleft", "bottomright", "topleft" or "topright" defining the location of the legend. "other" opens a new graphics device, while the other locations are passed to legend.

col

A character defining point colours.

bty

Box type, as in legend. Default is set to "n".

...

Additional parameters passed to legend.

Value

• Invisibly returns NULL

Details

The function has been updated in version 1.3.6 to recycle the default colours when more organelle classes are provided. See plot2D for details.