KEGG


Two pathways (MISMATCH REPAIR and REGULATION OF AUTOPHAGY) of the KEGG database


datasets

Pathifier is an algorithm that infers pathway deregulation
scores for each tumor sample on the basis of expression data.
This score is determined, in a context-specific manner, for
every particular dataset and type of cancer that is being
investigated. The algorithm transforms gene-level information
into pathway-level information, generating a compact and
biologically relevant representation of each sample.

Assif Yitzhaky

pathifier

Quantify deregulation of pathways in cancer

KEGG function

<dl>
    <dt><code>pathwaynames</code></dt><dd>The names of the pathways</dd> <dt><code>gs</code></dt><dd>The list of genes (by official gene symbol) in each pathway</dd> </dl> 

Format

Kanehisa M, Goto S, Sato Y, Furumichi M and Tanabe M. KEGG for integration and interpretation of large-scale molecular datasets. <em>Nucleic Acids Res</em>, 2012, Vol 40(Database issue):D109-D114.

Source

Two pathways (MISMATCH REPAIR and REGULATION OF AUTOPHAGY) of the KEGG database

KEGG: Two pathways of the KEGG database

Description

Usage

Arguments

Format

Source

Examples