convertSifnxIds

a SIFNX object (e.g. from the downloadPc2 function)

sifnx

the type of participant on which the conversion will occur.
Important because not all ID types apply to all entities and otherwise those entities
would be labeled as missing an ID.

participantType

an ID type for conversion (not used if mapping parameter used)

idType

a two column data.frame with columns mapping$PARTICIPANT (old 
IDs to convert from) and mapping$ID (new IDs to convert to)

mapping

remove edges where NA's were introduced due to failed conversions

naRm

The package provides a set of R functions for interacting with
    BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) molecular
    interaction database that are hosted by the Computational Biology Center at
    Memorial Sloan-Kettering Cancer Center (MSKCC). Pathway Commons databases
    include: BIND, BioGRID, CORUM, CTD, DIP, DrugBank, HPRD, HumanCyc, IntAct, KEGG,
    MirTarBase, Panther, PhosphoSitePlus, Reactome, RECON, TRANSFAC.

convertSifnxIds: Convert IDs in a SIFNX

Description

Usage

Arguments

Value

concept