PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and
Pathway Commons
Description
The package provides a set of R functions for interacting with
BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) molecular
interaction database that are hosted by the Computational Biology Center at
Memorial Sloan-Kettering Cancer Center (MSKCC). Pathway Commons databases
include: BIND, BioGRID, CORUM, CTD, DIP, DrugBank, HPRD, HumanCyc, IntAct, KEGG,
MirTarBase, Panther, PhosphoSitePlus, Reactome, RECON, TRANSFAC.