paxtoolsr (version 1.6.3)

getShortestPathSif: Get the shortest between two IDs (HGNC or CHEBI)

Description

Get the shortest between two IDs (HGNC or CHEBI)

Usage

getShortestPathSif(sif, idA, idB, mode = c("all", "out", "in"),
  weights = NULL, filterFun, ...)

Arguments

sif

a SIF network

idA

HGNC or CHEBI (CHEBI:XXXXX) ID

idB

HGNC or CHEBI (CHEBI:XXXXX) ID

mode

see shortest_paths() in igraph

weights

see shortest_paths() in igraph

filterFun

a function to filter multiple paths of the same length

...

additional arguments passed on to filterFun

Value

• a data.frame representing a SIF network

concept

paxtoolsr