paxtoolsr (version 1.6.3)

integrateBiopax: Integrate two BioPAX OWL files (DEPRECATED)

Description

This function merges two BioPAX OWL files

Usage

integrateBiopax(inputFile1, inputFile2, outputFile = NULL)

Arguments

inputFile1

a string of the name of the input BioPAX OWL file

inputFile2

a string of the name of the input BioPAX OWL file

outputFile

a string of the name of the output integrated BioPAX OWL file

Value

• an XMLInternalDocument representing a BioPAX OWL file

concept

paxtoolsr

Details

This method is deprecated. Use mergeBiopax instead.

See Also

mergeBiopax

Examples

outFile <- tempfile()
results <- integrateBiopax(system.file("extdata", "raf_map_kinase_cascade_reactome.owl", 
  package="paxtoolsr"), 
  system.file("extdata", "dna_replication.owl", package="paxtoolsr"), 
  outFile)