paxtoolsr (version 1.6.3)

mergeBiopax: Merges two BioPAX OWL files

Description

This function merges two BioPAX OWL files

Usage

mergeBiopax(inputFile1, inputFile2, outputFile = NULL)

Arguments

inputFile1

a string of the name of the input BioPAX OWL file

inputFile2

a string of the name of the input BioPAX OWL file

outputFile

a string of the name of the output merged BioPAX OWL file (Optional)

Value

• an XMLInternalDocument representing a BioPAX OWL file

concept

paxtoolsr

Details

Only entities that share IDs will be merged. No additional merging occurs on cross-references. Merging may result in warning messages caused as a result of redundant actions being checked against by the Java library; these messages may be ignored.

Examples

outFile <- tempfile()
results <- mergeBiopax(system.file("extdata", "raf_map_kinase_cascade_reactome.owl", 
                       package="paxtoolsr"), 
                       system.file("extdata", "dna_replication.owl", 
                       package="paxtoolsr"), 
                       outFile)