splitSifnxByPathway

a data.frame with SIF content with the additional column "PATHWAY_NAMES".
"PATHWAY_NAMES" should include pathway names delimited with a semi-colon: ";".

edges

a boolean that will parallelize the process; requires foreach/doSNOW/parallel packages

parallel

Splits SIFNX entries into individual pathways

The package provides a set of R functions for interacting with
    BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) molecular
    interaction database that are hosted by the Computational Biology Center at
    Memorial Sloan-Kettering Cancer Center (MSKCC). Pathway Commons databases
    include: BIND, BioGRID, CORUM, CTD, DIP, DrugBank, HPRD, HumanCyc, IntAct, KEGG,
    MirTarBase, Panther, PhosphoSitePlus, Reactome, RECON, TRANSFAC.

splitSifnxByPathway: Splits SIFNX entries into individual pathways

Description

Usage

Arguments

Value

concept

Details