paxtoolsr (version 1.6.3)

summarize: Summarize a BioPAX file

Description

This function provides a summary of BioPAX classes.

Usage

summarize(inputFile)

Arguments

inputFile
a string of the name of the input BioPAX OWL file

Value

  • list with BioPAX class counts

concept

paxtoolsr

Details

BioPAX classes are defined by the BioPAX specification: http://www.biopax.org/

Examples

summary <- summarize(system.file("extdata", "raf_map_kinase_cascade_reactome.owl", 
package="paxtoolsr"))