paxtoolsr (version 1.6.3)

toLevel3: Convert a PSIMI or older BioPAX OWL file to BioPAX Level 3

Description

This file will convert PSIMI or older BioPAX objects to BioPAX Level 3

Usage

toLevel3(inputFile, outputFile = NULL)

Arguments

inputFile

a string of the name of the input file

outputFile

a string of the name of the output BioPAX OWL file

Value

• an XMLInternalDocument representing a BioPAX OWL file

concept

paxtoolsr

Examples

inputFile <- system.file("extdata", "raf_map_kinase_cascade_reactome.owl", 
  package="paxtoolsr")
outFile <- tempfile()
results <- toLevel3(inputFile, outFile)