paxtoolsr (version 1.6.3)

toSif: Convert a BioPAX OWL file to SIF

Description

Convert a BioPAX OWL file to a binary SIF file

Usage

toSif(inputFile, outputFile = NULL)

Arguments

inputFile

a string of the name of the input BioPAX OWL file

outputFile

a string of the name of the output SIF file (Optional)

Value

• see readSif()

concept

paxtoolsr

Details

Information on SIF conversion is provided on the Pathway Commons site: http://www.pathwaycommons.org/pc2/

Examples

outFile <- tempfile()
results <- toSif(system.file("extdata", "raf_map_kinase_cascade_reactome.owl", 
  package="paxtoolsr"), 
  outFile)