paxtoolsr (version 1.6.3)

toSifnx: Converts BioPAX OWL file to extended binary SIF representation

Description

Converts BioPAX OWL file to extended binary SIF representation

Usage

toSifnx(inputFile, outputFile = tempfile())

Arguments

inputFile

a string with the name of the input BioPAX OWL file

outputFile

a string with the name of the output file for SIFNX information

Value

• see readSifnx()

concept

paxtoolsr

Details

Information on SIF conversion is provided on the Pathway Commons site: http://www.pathwaycommons.org/pc2/

Examples

inputFile <- system.file("extdata", "raf_map_kinase_cascade_reactome.owl", package="paxtoolsr")
results <- toSifnx(inputFile=inputFile)