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pbatR (version 2.0.2)

P2BAT

Description

This package provides data analysis via the pbat program, and an alternative internal implementation of the power calculations via simulation only. For analysis, this package provides a frontend to the PBAT software, automatically reading in the output from the pbat program and displaying the corresponding figure when appropriate (i.e. PBAT-logrank). It includes support for multiple processes and clusters. For analysis, users must download PBAT and accept it's license, available on the PBAT webpage. Both the data analysis and power calculations have command line and graphical interfaces using tcltk.

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Version

Install

install.packages('pbatR')

Monthly Downloads

157

Version

2.0.2

License

The license of this R package is GPL. The license of PBAT is available on the PBAT webpage, and must be downloaded separately from the link below.

Maintainer

Thomas Hoffmann

Last Published

January 29th, 2024

Functions in pbatR (2.0.2)

generic

`pbat' Object Generic Routines
c2bat

C2BAT
cluster

Cluster result functions
affectionPhe

Affection Phenotype Object
pbat.help

Help and Reporting Information
clean

Cleaning pbat(), pbat.last(), pbat.m() output.
phe

Phenotype Object
pbat.status

PBAT Status of Run
top

top
ped

Pedigree Object
pbat.set

Set Pbat Parameters
pbat

PBAT Graphical and Command Line Interface
write.pbat

Saving `pbat' Object
pbat.work

pbatRwork Temp Directory
obfuscate

Obfuscating Pedigree and Phenotype Files
power

Power Exploration