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pbatR (version 2.2-17)

Pedigree/Family-Based Genetic Association Tests Analysis and Power

Description

This R package provides power calculations via internal simulation methods. The package also provides a frontend to the now abandoned PBAT program (developed by Christoph Lange), and reads in the corresponding output and displays results and figures when appropriate. The license of this R package itself is GPL. However, to have the program interact with the PBAT program for some functionality of the R package, users must additionally obtain the PBAT program from Christoph Lange, and accept his license. Both the data analysis and power calculations have command line and graphical interfaces using tcltk.

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Version

Install

install.packages('pbatR')

Monthly Downloads

224

Version

2.2-17

License

GPL

Maintainer

Thomas Hoffmann

Last Published

January 29th, 2024

Functions in pbatR (2.2-17)

phe

Phenotype Object
power

Power Exploration
write.pbat

Saving `pbat' Object
generic

`pbat' Object Generic Routines
pbat.work

pbatRwork Temp Directory
top

top
ped

Pedigree Object
pbat

PBAT Graphical and Command Line Interface
pbat.status

PBAT Status of Run
clean

Cleaning pbat(), pbat.last(), pbat.m() output.
pbat.set

Set Pbat Parameters
obfuscate

Obfuscating Pedigree and Phenotype Files
pbat.help

Help and Reporting Information
affectionPhe

Affection Phenotype Object
cluster

Cluster result functions
c2bat

C2BAT
cped

Phenotype Object