affectionPhe

Creates a phenotype object from a pedigree object (see `ped' and
 `phe'), preserving affection status. Mostly used internally, or as a
 substitute offset fix for the GUI.

interface

This R package provides power calculations via internal simulation methods. The package also provides a frontend to the now abandoned PBAT program (developed by Christoph Lange), and reads in the corresponding output and displays results and figures when appropriate. The license of this R package itself is GPL. However, to have the program interact with the PBAT program for some functionality of the R package, users must additionally obtain the PBAT program from Christoph Lange, and accept his license. Both the data analysis and power calculations have command line and graphical interfaces using tcltk.

Thomas Hoffmann

pbatR

Pedigree/Family-Based Genetic Association Tests Analysis and
Power

affectionPhe function

<dl> <dt>ped</dt>
<dd>An object of class <code>ped</code>.</dd> <dt>trait</dt>
<dd>Name for the trait in the generated phenotype file.</dd> <dt>offset</dt>
<dd>The offset to be used.</dd></dl>

Arguments

Affection Phenotype Object — affectionPhe

<dl>

 <dt>ped</dt>
<dd>An object of class <code>ped</code>.</dd>

 <dt>trait</dt>
<dd>Name for the trait in the generated phenotype file.</dd>

 <dt>offset</dt>
<dd>The offset to be used.</dd>

</dl>

affectionPhe: Affection Phenotype Object

Description

Usage

Arguments

Details

See Also