The top n markers by conditional power.

interface

This R package provides power calculations via internal simulation methods. The package also provides a frontend to the now abandoned PBAT program (developed by Christoph Lange), and reads in the corresponding output and displays results and figures when appropriate. The license of this R package itself is GPL. However, to have the program interact with the PBAT program for some functionality of the R package, users must additionally obtain the PBAT program from Christoph Lange, and accept his license. Both the data analysis and power calculations have command line and graphical interfaces using tcltk.

Thomas Hoffmann

pbatR

Pedigree/Family-Based Genetic Association Tests Analysis and
Power

top function

<dl> <dt>pbatObj</dt>
<dd>An object of class 'pbat', i.e. the results of
 'pbat.m(...)'.</dd> <dt>n</dt>
<dd>How many markers to print. 0 means all will be returned.</dd> <dt>sortBy</dt>
<dd>Name of conditional power column to sort by, for
 instance if you wanted to look at the GxE, you might specify
 "FBATGxE" instead.</dd></dl>

Arguments

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<dl>

 <dt>pbatObj</dt>
<dd>An object of class 'pbat', i.e. the results of
 'pbat.m(...)'.</dd>

 <dt>n</dt>
<dd>How many markers to print. 0 means all will be returned.</dd>

 <dt>sortBy</dt>
<dd>Name of conditional power column to sort by, for
 instance if you wanted to look at the GxE, you might specify
 "FBATGxE" instead.</dd>

</dl>

top: top

Description

Usage

Arguments

Details