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pbatR (version 2.2-7)

P2BAT

Description

This package provides data analysis via the pbat program, and an alternative internal implementation of the power calculations via simulation only. For analysis, this package provides a frontend to the PBAT software, automatically reading in the output from the pbat program and displaying the corresponding figure when appropriate (i.e. PBAT-logrank). It includes support for multiple processes and clusters. For analysis, users must download PBAT (developed by Christoph Lange) and accept it's license, available on the PBAT webpage. Both the data analysis and power calculations have command line and graphical interfaces using tcltk.

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Version

Install

install.packages('pbatR')

Monthly Downloads

157

Version

2.2-7

License

GPL

Maintainer

Thomas Hoffmann

Last Published

December 29th, 2012

Functions in pbatR (2.2-7)

obfuscate

Obfuscating Pedigree and Phenotype Files
cluster

Cluster result functions
c2bat

C2BAT
pbat

PBAT Graphical and Command Line Interface
clean

Cleaning pbat(), pbat.last(), pbat.m() output.
pbat.status

PBAT Status of Run
top

top
generic

`pbat' Object Generic Routines
write.pbat

Saving `pbat' Object
pbat.work

pbatRwork Temp Directory
affectionPhe

Affection Phenotype Object
pbat.help

Help and Reporting Information
cped

Phenotype Object
pbat.set

Set Pbat Parameters
power

Power Exploration
phe

Phenotype Object
ped

Pedigree Object