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pedantics (version 1.5)

Functions to facilitate power and sensitivity analyses for genetic studies of natural populations

Description

Contains functions for sensitivity and power analysis, for calculating statistics describing pedigrees from wild populations, and for viewing pedigrees

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Version

Install

install.packages('pedantics')

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Version

1.5

License

GPL-2 | GPL-3

Maintainer

Michael Morrissey

Last Published

January 23rd, 2014

Functions in pedantics (1.5)

makePedigreeNumeric

Converts a pedigree with individuals specified as factors to a numeric pedigree

genomesim

A function to simulate QTL and/or SNP data.

gryphons

Example dataset for pedantics examples and titorial

fpederr

Simulates a pedigree with errors and missing data from a complete pedigree.

rpederrBird

Permutes a bird pedigree to create a plausible complete pedigree

pedStatSummary

Post-processes output from pedigreeStats

pedigreeStats

Calculates a range of statistics of pedigrees.

microsim

Simulates microsatellite data across a pedigree.

drawPedigree

Produce a graphical representation of a pedigree

fixPedigree

Manipulating pedigrees to prepare them for requirements of subsequent analyses

rpederr

Permutes a pedigree to create a plausible complete pedigree

makePedigreeFactor

Converts a numeric pedigee to a pedigree with factors

pedantics-package

Tools to facilitate quantitative genetic studies of natural populations, especially with respect to the use of pedigrees in such problems.

phensim

A function to simulated phenotypic data