Learn R Programming

pedmod (version 0.2.4)

Pedigree Models

Description

Provides functions to estimate mixed probit models using, for instance, pedigree data like in . The models are also commonly called liability threshold models. The approximation is based on direct log marginal likelihood approximations like the randomized Quasi-Monte Carlo suggested by with a similar procedure to approximate the derivatives. The minimax tilting method suggested by is also supported. Graph-based methods are also provided that can be used to simplify pedigrees.

Copy Link

Version

Install

install.packages('pedmod')

Monthly Downloads

21

Version

0.2.4

License

GPL-3

Issues

Pull Requests

Stars

Forks

Maintainer

Benjamin Christoffersen

Last Published

September 11th, 2022

Functions in pedmod (0.2.4)

mvndst

Multivariate Normal Distribution CDF and Its Derivative
max_balanced_partition

Finds an Approximately Balanced Connected Partition
pedmod_opt

Optimize the Log Marginal Likelihood
pedmod_profile_nleq

Computes Profile Likelihood Based Confidence Intervals for a Nonlinear Transformation of the Variables
eval_pedigree_ll

Approximate the Log Marginal Likelihood
block_cut_tree

Creates a Block-cut Tree Like Object
biconnected_components

Finds the Biconnected Components
pedmod_profile_prop

Computes Profile Likelihood Based Confidence Intervals for the Proportion of Variance
pedigree_ll_terms

Get a C++ Object for Log Marginal Likelihood Approximations
pedmod_profile

Computes Profile Likelihood Based Confidence Intervals
unconnected_partition

Finds an Approximately Balanced Partition
pedmod_sqn

Optimize the Log Marginal Likelihood Using a Stochastic Quasi-Newton Method
standardized_to_direct

Transform Between Parameterizations