testQCmatch

Measures that every batch has at least the specified number of matching QC sample sets in a batch.

Provides randomization using permutation for applications.  To provide a Quality Control (QC) check, QC samples can be randomized within strata.  A second function allows for the ability to ”switch” samples to meet set requirements and perform a certain amount of minimization on these switches.  The functions are flexible for users by specifying strata size and number of QC samples per strata.  The randomization meets the following requirements
• QC sample requirements: QC samples not adjacent, QC
samples from same mother must follow certain patterns.
• Matched sample sets must be within a single strata, and next
to each other.

Michelle Mellers

permRand

Permutation Randomization

Thaddeus Haight

testQCmatch function

<dl><dt>dataS</dt>
<dd>Randomized data.</dd>
<dt>numQCs</dt>
<dd>Number of QCs specified per dataset.</dd>
<dt>numMatch</dt>
<dd>Number of QC samples form a single mother within a batch.</dd></dl>

Arguments

Tests QC matches — testQCmatch

<dl>

<dt>dataS</dt>
<dd>Randomized data.</dd>


<dt>numQCs</dt>
<dd>Number of QCs specified per dataset.</dd>


<dt>numMatch</dt>
<dd>Number of QC samples form a single mother within a batch.</dd>

</dl>

testQCmatch: Tests QC matches

Description

Usage

Value

Arguments

Examples