GetVariantPos

Retrieve POS (base-pair coordinate on a chromosome) for given variant
index.

A thin wrapper over PLINK 2's core libraries which provides an R
interface for reading .pgen files.  A minimal .pvar loader is also
included.  Chang et al. (2015) \doi{10.1186/s13742-015-0047-8}.

Christopher Chang

pgenlibr

PLINK 2 Binary (.pgen) Reader

Eric Biggers

Yann Collet

Meta Platforms, Inc. 

Evan Nemerson

Przemyslaw Skibinski

Nick Terrell

GetVariantPos function

<dl><dt>pvar</dt>
<dd>Object returned by NewPvar().</dd>
<dt>variant_num</dt>
<dd>Variant index (1-based).</dd></dl>

Arguments

Retrieve POS (base-pair coordinate on a chromosome) for given variant
index. — GetVariantPos

<dl>

<dt>pvar</dt>
<dd>Object returned by NewPvar().</dd>


<dt>variant_num</dt>
<dd>Variant index (1-based).</dd>

</dl>

GetVariantPos: Retrieve POS (base-pair coordinate on a chromosome) for given variant index.

Description

Usage

Value

Arguments