VariantScores

This function treats the data as diploid; divide by 2 to obtain scores
based on a haploid dosage matrix.

A thin wrapper over PLINK 2's core libraries which provides an R
interface for reading .pgen files.  A minimal .pvar loader is also
included.  Chang et al. (2015) \doi{10.1186/s13742-015-0047-8}.

Christopher Chang

pgenlibr

PLINK 2 Binary (.pgen) Reader

Eric Biggers

Yann Collet

Meta Platforms, Inc. 

Evan Nemerson

Przemyslaw Skibinski

Nick Terrell

VariantScores function

<dl><dt>pgen</dt>
<dd>Object returned by NewPgen().</dd>
<dt>weights</dt>
<dd>Sample weights.</dd>
<dt>variant_subset</dt>
<dd>Integer vector containing 1-based indexes of variants
to include in the dosage matrix. Optional; by default, all variants are
included.</dd></dl>

Arguments

Compute variant scores. — VariantScores

<dl>

<dt>pgen</dt>
<dd>Object returned by NewPgen().</dd>


<dt>weights</dt>
<dd>Sample weights.</dd>


<dt>variant_subset</dt>
<dd>Integer vector containing 1-based indexes of variants
to include in the dosage matrix. Optional; by default, all variants are
included.</dd>

</dl>

VariantScores: Compute variant scores.

Description

Usage

Value

Arguments