phantom (version 0.1.3)

geneset.names: Print all geneset names in geneset list

Description

This function allows user to print all the geneset names in the loaded geneset list such that user can find the specific query_geneset name for run.phantom funciton.

Usage

geneset.names(geneset_list = NULL)

Arguments

geneset_list

User provided genesets list loaded by load.geneset(). Phanotm package provids four geneset lists from different resources: kegg, reactome, emory geneset and baylor modules. These genesets can be obtained with data(), e.g. data(kegg.geneset)

Examples

# NOT RUN {
## store all the geneset names in one vector
 
# }
# NOT RUN {
g.names = geneset.names(reactome.geneset)
# }