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phantom (version 0.1.3)

Gene Set Pareto Heterogeneity Analysis of Time-Course Gene Expression Data

Description

Pareto front based statistical tool for detecting heterogeneity in gene sets and biological modules from time-course data. Details about this method are described in Gu, J., et al. (2017) : Phantom: investigating heterogeneous gene sets in time-course data.

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Version

Install

install.packages('phantom')

Monthly Downloads

4

Version

0.1.3

License

GPL-2

Maintainer

Jinyan Chan

Last Published

March 29th, 2018

Functions in phantom (0.1.3)

load.geneset

Load geneset in gmt file format
run.phantom

Run phantom analysis
time.course.data

A sample time.course.data with 15 time points
run.phantom.batch

Run phantom batch analysis
load.data

Load data function
geneset.names

Print all geneset names in geneset list