load.geneset

<p>the genesets gmt file path and name on user's local machine</p>

geneset_file

<p>This function allows user to load in the genesets that are downloaded from GSEA (gmt format)
into a format that can be used by run.phantom and run.phantom.batch functions.</p>

load

geneset

Pareto front based statistical tool for detecting heterogeneity in gene sets and biological modules from time-course data. Details about this method are described in Gu, J., et al. (2017) <doi: 10.1093/bioinformatics/btx348>: Phantom: investigating heterogeneous gene sets in time-course data.

load.geneset: Load geneset in gmt file format

Description

Usage

Arguments