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phyloTop (version 1.1.1)

Phylogenetic Tree Topological Properties Evaluator

Description

Calculates some topological properties of phylogenetic trees

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Version

Install

install.packages('phyloTop')

Monthly Downloads

253

Version

1.1.1

License

GPL-2

Maintainer

Michael Boyd

Last Published

May 14th, 2014

Functions in phyloTop (1.1.1)

laddItr

Ladder Iteration Tool
rTrees

Random Trees
modelAnalysis

Model Analysis
nodeAnalysis

Node Analysis Functions
allNodeAnalysis

All Node Analysis
topFuncs

Functions from Bases to Topological Properties
treeAnalysis

Tree Analysis Functions
treeGraphics

Tree Graphics
fastModelAnalysis

Fast Model Analysis
utility

Utility Functions
exampleSummary

Example Tree Summary
phyloTop-package

Phylogenetic Tree Topological Properties Evaluator
SimulatedOutbreakGenealogy

Simulated outbreaks with genealogies
configurations

Configurations in Trees
homTrees

Homogeneous Trees
ssTrees

Super Spreader Trees
rootLaddDist

Root Ladder Distance