phyloTop (version 1.1.1)

ssTrees: Super Spreader Trees

Description

A list of 50 trees generated by the super spreader model.

Usage

data(ssTrees)

format

A list of length 50 where each object is an object of class phylo4.

source

ssTrees was created by Caroline Colijn of Imperial College London.

Details

ssTrees and homTrees were created by models based on the spread of disease. They they are from a transmission model with only one pathogen lineage per host. The former had a fifth of the hosts seeding five times as many infections as the others, and while the latter was homogeneous - everyone was equally infectious. They all have 60 nodes or a little more.

See Also

exampleSummary for a more detailed summary.

Examples

data(ssTrees)
topList <- c(avgLadder,colless,function(tree){nConfig(tree,2)})
treeListSummary(ssTrees,topList)