import_env_file

(Required). A charater string of the
  ENV filename (relative or absolute)

envfilename

(Optional). <code><a rd-options="" href="/link/phylo-class?package=phyloseq&version=1.12.2" data-mini-rdoc="phyloseq::phylo-class">phylo-class</a></code> object
  to be paired with the output otu_table.

tree

A character string indicating the delimiter
  used in the file. The default is <code>"\t"</code>.

Additional parameters passed on to
  <code><a rd-options="" href="/link/read.table?package=phyloseq&version=1.12.2" data-mini-rdoc="phyloseq::read.table">read.table</a></code>.


  Convenience wrapper function to read the
  environment-file, as formatted for input to the UniFrac
  server (<a href="http://bmf2.colorado.edu/unifrac/">http://bmf2.colorado.edu/unifrac/</a>). The
  official format of these files is that each row specifies
  (in order) the sequence name, source sample, and
  (optionally) the number of times the sequence was
  observed.


phyloseq provides a set of classes and tools
to facilitate the import, storage, analysis, and
graphical display of microbiome census data.

Paul J McMurdie

phyloseq

Handling and analysis of high-throughput microbiome
census data.

import_env_file function

(Optional). <code><a rd-options='' href='phylo-class'>phylo-class</a></code> object
  to be paired with the output otu_table.

Additional parameters passed on to
  <code><a rd-options='' href='read.table'>read.table</a></code>.


  Convenience wrapper function to read the
  environment-file, as formatted for input to the UniFrac
  server (<a href = 'http://bmf2.colorado.edu/unifrac/'>http://bmf2.colorado.edu/unifrac/</a>). The
  official format of these files is that each row specifies
  (in order) the sequence name, source sample, and
  (optionally) the number of times the sequence was
  observed.


import_env_file: Read a UniFrac-formatted ENV file.

Description

Usage

Arguments

Value

References

See Also

Examples