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plasma (version 1.1.4)

Partial LeAst Squares for Multiomic Analysis

Description

Contains tools for supervised analyses of incomplete, overlapping multiomics datasets. Applies partial least squares in multiple steps to find models that predict survival outcomes. See Yamaguchi et al. (2023) .

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Install

install.packages('plasma')

Monthly Downloads

522

Version

1.1.4

License

Apache License (== 2.0)

Maintainer

Kevin Coombes

Last Published

April 7th, 2025

Functions in plasma (1.1.4)

MultiplePLSCoxModels-class

Class "MultiplePLSCoxModels"
MultiOmics-class

Class "MultiOmics"
Imputation

Imputation
plasma-class

Class "plasma"
Contribution-class

Class "Contribution"
SingleModel-class

Class "SingleModel"
esca-type-data

ESCA type data
TCGA-ESCA

Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA).
CombinedWeights-class

Class "CombinedWeights"
plasmaPredictions-class

Class "plasmaPredictions"