plateCore (version 1.30.0)

getGroups: Retrieve Negative control groups from a flowPlate

Description

Retrieve a list of negative control-based groups from a flowPlate, based on the information in wellAnnotation.

Usage

getGroups(data,type="Negative.Control",chan, ...)

Arguments

data

A flowPlate dataset.

type

Currently only Negative.Control groups are supported.

chan

Fluorescence channel of interest ("FL1-H", "PE-H", etc.)

...

optional arguments

Value

Returns a list of groups, where each group contains a single negative control well and the associated test well for a particular channel.

Examples

library(plateCore)
data(plateCore)

# Create a flowPlate from the sample data in plateCore
fp <- flowPlate(pbmcPlate,wellAnnotation,plateName="P1")

# Create a set of negative control gates and then apply them
negCon <- getGroups(fp,chan="FL1-H")

negCon[1:2]