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plateCore (version 1.30.0)

Statistical tools and data structures for plate-based flow cytometry

Description

Provides basic S4 data structures and routines for analyzing plate based flow cytometry data.

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Version

Version

1.30.0

License

Artistic-2.0

Maintainer

Errol Strain

Last Published

February 15th, 2017

Functions in plateCore (1.30.0)

getGroups

Retrieve Negative control groups from a flowPlate
wellAnnotation

Retrieve a data.frame describing the content of a flowPlate
xyplot

Scatter plots (dotplots) for flowPlates.
compensate

Compensate a flowPlate to correct for the effects of spillover.
compensationSet

Sample Compensation Data Set
applyControlGates

Apply control gates to a flowPlate
flowPlate-class

The flowPlate class.
plateSet

Get the flowSet from a flowPlate object
densityplot

One-dimensional density plots for flowPlates
gutterPlot

gutterPlot
fpbind

Merge multiple flowPlates into a single virtual flowPlate
Subset

Subset
plotPlate

plotPlate
prepanel.xyplot.flowPlate

Lattice-flowViz style panel function for flowPlate xyplot.
%on%

Methods for Function %on% in Package `plateCore'
pbmcPlate

pbmcPlate Data Set
prepanel.densityplot.flowPlate

Lattice-flowViz style panel function for flowPlate densityplot.
plateCore-package

plateCore: A Bioconductor package for high throughput analysis of flow cytometry data
panel.densityplot.flowPlate

Lattice-flowViz style panel function for flowPlate densityplot.
fixAutoFl

Correct for the effects of cell size (FSC) on autofluorescence
flowPlate

Create a flowPlate
panel.xyplot.flowPlate

Lattice-flowViz style panel function for flowPlate xyplot.
mfiPlot

mfiPlot
setControlGates

Create control gates for a flowPlate
summaryStats

Compute summary statistics on a flowPlate