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platetools (version 0.1.7)

Tools and Plots for Multi-Well Plates

Description

Collection of functions for working with multi-well microtitre plates, mainly 96, 384 and 1536 well plates.

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Install

install.packages('platetools')

Monthly Downloads

322

Version

0.1.7

License

MIT + file LICENSE

Issues

16

Pull Requests

0

Stars

55

Forks

15

Maintainer

Scott Warchal

Last Published

March 7th, 2024

Functions in platetools (0.1.7)

plate_map_multiple

row, column for multiple features
list_to_dataframe

Converts list to a dataframe in a sensible way
raw_grid

Plots multiple platemaps with heatmap of raw values
plate_map_scale

creates dataframe of row, column, and scaled data from well IDs
raw_map

Plots a platemap with heatmap of raw values
plt384

ggplot plate object
z_map

Plots a platemap with heatmap of scaled values
plt48

ggplot plate object
plate_map_grid_scale

creates dataframe of row, column, plate_id from data regarding wellIDs
med_smooth

2-way median smooth
plt96

ggplot plate object
plt6

ggplot plate object
plate_map_grid

creates dataframe of row, column, plate_id from data regarding wellIDs
z_grid

Plots multiple platemaps with heatmap of scaled values
plt1536

ggplot plate object
set_block

Set values in rectangular areas of a plate
pc_map

Principal component heatmap in a plate layout
plt24

ggplot plate object
well_to_num

Converts well labels to numbers
rotate_plate

rotates matrix by 180 degrees
plate_map

creates dataframe of row,column,data from wellID and data
plate_effect

Two way-median smooth on a plate map
read_map

Annotates dataframe with metadata in a platemap matrix
readmap_data

example data in a plate map form
b_grid

Plots multiple b-scored normalised platemaps
bhit_map

Platemap to identify 'hits' following a B-score normalisation
fill_plate

Fill in missing wells
hit_grid

Plots multiple platemaps with and identifies hits
dist_map

Plots distributions per well in a plate layout
b_score

2 way median polish
hit_map

Platemap to identify 'hits' in a screen
check_plate_input

checks plate input for dodgy well plate combinations
b_map

Plots a heatmap of b-score normalised values in a plate layout
is_1536

internal 1536 plate function for plate_map
pc_grid

Plots multiple platemaps as a heatmap of the first principal component.
is_old_ggplot

check ggplot2 version
legend_title

change legend title
pchit_grid

Plots multiple heatmaps identifying hits from the first principal component
num_to_well

Converts numbers to well labels
missing_wells

Returns wells that are missing from a complete plate
pchit_map

Plots a heatmap identifying hits from the first principal component
plate_matrix

plate layout matrix from well IDs
plt12

ggplot plate object