med_smooth

Given a platemap produced by <code>plate_map</code>, will return
a dataframe with after values have been transformed into
a matrix mirroring the plate structure and undergoing a
2-way median polish to remove row or column effects

Collection of functions for working with multi-well microtitre
plates, mainly 96, 384 and 1536 well plates.

Scott Warchal

platetools

Tools and Plots for Multi-Well Plates

med_smooth function

<dl><dt>platemap</dt>
<dd>dataframe produced by <code>plate_map</code></dd>
<dt>plate</dt>
<dd>numeric, number of wells in plate, either 96 or 384</dd>
<dt>eps</dt>
<dd>real number greater than 0. A tolerance for divergence</dd>
<dt>maxiter</dt>
<dd>int, the maximum number of iterations</dd>
<dt>trace.iter</dt>
<dd>Boolean, should progress in convergence be reported?</dd>
<dt>na.rm</dt>
<dd>Boolean, should missing values be removed?</dd>
<dt>normalise</dt>
<dd>Boolean, should the data be divided by the MAD?</dd></dl>

Arguments

2-way median smooth — med_smooth

<dl>

<dt>platemap</dt>
<dd>dataframe produced by <code>plate_map</code></dd>


<dt>plate</dt>
<dd>numeric, number of wells in plate, either 96 or 384</dd>


<dt>eps</dt>
<dd>real number greater than 0. A tolerance for divergence</dd>


<dt>maxiter</dt>
<dd>int, the maximum number of iterations</dd>


<dt>trace.iter</dt>
<dd>Boolean, should progress in convergence be reported?</dd>


<dt>na.rm</dt>
<dd>Boolean, should missing values be removed?</dd>


<dt>normalise</dt>
<dd>Boolean, should the data be divided by the MAD?</dd>

</dl>

med_smooth: 2-way median smooth

Description

Usage

Value

Arguments