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plw (version 1.30.0)

Probe level Locally moderated Weighted t-tests.

Description

Probe level Locally moderated Weighted median-t (PLW) and Locally Moderated Weighted-t (LMW).

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Version

Version

1.30.0

License

GPL-2

Maintainer

Magnus Astrand

Last Published

February 15th, 2017

Functions in plw (1.30.0)

HowToPLW

View HowToPLW
AffySpikeU95Subset

Spike-in data
plw

Probe level Locally moderated Weighted median-t.
scaleParameterPlot

Scale parameter plotted against mean intensity
statByIndex

Computes statistics by index or by row
topRankSummary

Return or plots analysis result for top ranking or selected probe sets
varHistPlot

Variance histogram and density
logitT

logit-t and t-test by row
getKnots

Spline-knots for plw and lmw
estimateMVbeta

Zero mean multivariate t-dist. with covariate dependent scale.
estimateSigma

Fit zero mean multivariate t-distribution, known df
estimateSigmaMV

Fit zero mean multivariate t-distribution
plw-package

plw
lmw

Locally Moderated Weighted-t.
estimateSigmaMVbeta

Zero mean multivariate t-dist. with covariate dependent scale.