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pqsfinder (version 1.0.2)

Identification of potential quadruplex forming sequences

Description

The main functionality of the this package is to detect DNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, this package is able to detect sequences responsible for G4s folded from imperfect G-runs containing bulges or mismatches and as such is more sensitive than competing algorithms.

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Version

Version

1.0.2

License

BSD_2_clause + file LICENSE

Maintainer

Jiri Hon

Last Published

February 15th, 2017

Functions in pqsfinder (1.0.2)

score,PQSViews-method

Get PQS score vector
pqsfinder

Identificate potential quadruplex forming sequences.
density,PQSViews-method

Get density vector
show,PQSViews-method

Show method
as.character,PQSViews-method

Coerce to character vector
PQSViews-class

An S4 class to represent potential quadruplex forming sequences.
PQSViews

PQSViews class constructor.
strand,PQSViews-method

Get PQS strand vector