.PQSViews

PQSViews-class

Represents potential quadruplex forming sequences found by
<code><a href="/link/pqsfinder?package=pqsfinder&version=1.0.2" rd-options="" data-mini-rdoc="pqsfinder::pqsfinder">pqsfinder</a></code> function. This is a subclass of
<code><a href="/link/XStringViews-class?package=pqsfinder&version=1.0.2" rd-options="" data-mini-rdoc="pqsfinder::XStringViews-class">XStringViews-class</a></code> class and adds one more slot.

The main functionality of the this package is to detect
        DNA sequence patterns that are likely to fold into an
        intramolecular G-quadruplex (G4). Unlike many other approaches,
        this package is able to detect sequences responsible for G4s
        folded from imperfect G-runs containing bulges or mismatches
        and as such is more sensitive than competing algorithms.

Jiri Hon

pqsfinder

Identification of potential quadruplex forming sequences

PQSViews-class function

Represents potential quadruplex forming sequences found by
<code><a href="pqsfinder" rd-options="">pqsfinder</a></code> function. This is a subclass of
<code><a href="XStringViews-class" rd-options="">XStringViews-class</a></code> class and adds one more slot.

PQSViews-class: An S4 class to represent potential quadruplex forming sequences.

Description

Arguments