Usage
pvpick(x, alpha=0.95, pv="au", type="geq", max.only=TRUE)
pvrect(x, alpha=0.95, pv="au", type="geq", max.only=TRUE, border=2, ...)
## S3 method for class 'pvclust':
lines(x, alpha=0.95, pv="au", type="geq", col=2, lwd=2, ...)
Arguments
x
object of class pvclust.
alpha
threshold value for $p$-values.
pv
character string which specifies the $p$-value to be
used. It should be either of "au" or "bp",
corresponding to AU $p$-value or BP value, respectively. See
plot.pvclust for details.
type
one of "geq", "leq", "gt" or
"lt". If "geq" is specified, clusters with
$p$-value greater than or equals the threshold given by
"alpha" are returned or d
max.only
logical. If some of clusters with high/low
$p$-values have inclusion relation, only the largest cluster is
returned (or displayed) when max.only=TRUE.
border
numeric value which specifies the color of borders of
rectangles.
col
numeric value which specifies the color of lines.
lwd
numeric value which specifies the width of lines.
...
other graphic parameters to be used.