qtl (version 1.38-4)

mqmextractmarkers: MQM marker extraction

Description

Extract the real markers from a cross object that includes pseudo markers

Usage

mqmextractmarkers(mqmresult)

Arguments

mqmresult

result from mqmscan, including pseudo markers

Value

• Returns a scanone object with the pseudo markers removed

See Also

% \input{"inst/docs/Sources/MQM/mqm/standard_seealso.txt"}
• The MQM tutorial:http://www.rqtl.org/tutorials/MQM-tour.pdf
• MQM- MQM description and references
• mqmscan- Main MQM single trait analysis
• mqmscanall- Parallellized traits analysis
• mqmaugment- Augmentation routine for estimating missing data
• mqmautocofactors- Set cofactors using marker density
• mqmsetcofactors- Set cofactors at fixed locations
• mqmpermutation- Estimate significance levels
• scanone- Single QTL scanning % -----^^ inst/docs/Sources/MQM/mqm/standard_seealso.txt ^^-----

Examples

data(multitrait)

multitrait <- fill.geno(multitrait)

result <- mqmscan(multitrait)
newresult <- mqmextractmarkers(result)