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qtl2ggplot (version 1.2.6)

Data Visualization for QTL Experiments

Description

Functions to plot QTL (quantitative trait loci) analysis results and related diagnostics. Part of 'qtl2', an upgrade of the 'qtl' package to better handle high-dimensional data and complex cross designs.

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Install

install.packages('qtl2ggplot')

Monthly Downloads

343

Version

1.2.6

License

GPL-3

Issues

0

Pull Requests

0

Stars

5

Forks

2

Maintainer

Brian Yandell

Last Published

July 28th, 2025

Functions in qtl2ggplot (1.2.6)

listof_scan1coef

List of scan1coef objects
ggplot_scan1

Plot a genome scan
ggplot_snpasso

Plot SNP associations
sdp_to_pattern

Convert sdp to pattern
color_patterns_set

Set up colors for patterns or points
ggplot_pxg

Plot phenotype vs genotype
color_patterns_get

Set up col, pattern and group for plotting.
ggplot_coef

Plot QTL effects along chromosome
ggplot_peaks

Plot QTL peak locations
ggplot_genes_internal

GGPlot internal routine for ggplot_genes
ggplot_onegeno

Plot one individual's genome-wide genotypes
ggplot_listof_scan1coef

Plot of object of class listof_scan1coeff
color_patterns_pheno

Set up col, pattern, shape and group for plotting.
summary_scan1

Summary of scan1 object
ggplot_genes

Plot gene locations for a genomic interval