color_patterns_pheno

Set up col, pattern, shape and group for plotting.

Functions to plot QTL (quantitative trait loci) analysis
results and related diagnostics.
Part of 'qtl2', an upgrade of the 'qtl'
package to better handle high-dimensional data and complex cross
designs.

Brian Yandell

qtl2ggplot

Data Visualization for QTL Experiments

Brian S Yandell 

Karl W Broman 

color_patterns_pheno function

<dl><dt>scan1ggdata</dt>
<dd>data frame to be used for plotting</dd>
<dt>lod</dt>
<dd>matrix of LOD scores by position and pheno</dd>
<dt>pattern</dt>
<dd>allele pattern of form <code>AB:CDEFGH</code></dd>
<dt>col</dt>
<dd>Color for <code>color</code> column in <code>scan1ggdata</code></dd>
<dt>shape</dt>
<dd>Shape for <code>shape</code> column in <code>scan1ggdata</code></dd>
<dt>patterns</dt>
<dd>Connect SDP patterns: one of <code>c("none","all","hilit")</code></dd>
<dt>facet</dt>
<dd>use <code><a href="https://ggplot2.tidyverse.org/reference/facet_wrap.html">facet_wrap</a></code> if not <code>NULL</code></dd></dl>

Arguments

Set up col, pattern, shape and group for plotting. — color_patterns_pheno

<dl>

<dt>scan1ggdata</dt>
<dd>data frame to be used for plotting</dd>


<dt>lod</dt>
<dd>matrix of LOD scores by position and pheno</dd>


<dt>pattern</dt>
<dd>allele pattern of form <code>AB:CDEFGH</code></dd>


<dt>col</dt>
<dd>Color for <code>color</code> column in <code>scan1ggdata</code></dd>


<dt>shape</dt>
<dd>Shape for <code>shape</code> column in <code>scan1ggdata</code></dd>


<dt>patterns</dt>
<dd>Connect SDP patterns: one of <code>c("none","all","hilit")</code></dd>


<dt>facet</dt>
<dd>use <code><a href='https://ggplot2.tidyverse.org/reference/facet_wrap.html'>facet_wrap</a></code> if not <code>NULL</code></dd>

</dl>

color_patterns_pheno: Set up col, pattern, shape and group for plotting.

Description

Usage

Value

Arguments