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qtlmt (version 0.1-1)

Tools for mapping multiple complex traits

Description

This software provides tools for simultaneous analysis of multiple traits in a backcross (BC) or recombinant inbred lines (RIL) population. It can be used to select an optimal subset of traits for multiple-trait mapping, analyze multiple traits via the SURE model and perform multiple-trait composite multiple-interval mapping.

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Version

Install

install.packages('qtlmt')

Monthly Downloads

19

Version

0.1-1

License

GPL (>= 2)

Maintainer

Riyan Cheng

Last Published

June 27th, 2011

Functions in qtlmt (0.1-1)

varSelect

Variable selection
mtcmim

MTCMIM
sureEps

Epistasis in a SURE model
dataSets

Data sets
sureStep

SURE model selection
varStep

Variable selection
varT2

Hotelling's T^2 test statistic
misFct

Miscellaneous functions
sureEst

SURE model parameter estimation
mtcmimStep

MTCMIM model selection
varGroup

Group variables
mStep

Model selection in multivariate multiple regression
mlogLik

Extract log-likelihood
mAdd1

Add or drop all possible terms