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quantro (version 1.6.2)

A test for when to use quantile normalization

Description

A data-driven test for the assumptions of quantile normalization using raw data such as objects that inherit eSets (e.g. ExpressionSet, MethylSet). Group level information about each sample (such as Tumor / Normal status) must also be provided because the test assesses if there are global differences in the distributions between the user-defined groups.

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Version

Version

1.6.2

License

GPL (>=3)

Maintainer

Stephanie Hicks

Last Published

February 15th, 2017

Functions in quantro (1.6.2)

anova

Accessors for the 'anova' slot of a quantro object.
summary

Accessors for the 'summary' slot of a quantro object.
quantroStat

Accessors for the 'quantroStat' slot of a quantro object.
show

quantro
MSwithin

Accessors for the 'MSwithin' slot of a quantro object.
flowSorted

A subset of FlowSorted.DLPFC.450k data set
quantroStatPerm

Accessors for the 'quantroStatPerm' slot of a quantro object.
MSbetween

Accessors for the 'MSbetween' slot of a quantro object.
matdensity

Density plots of columns in a matrix
matboxplot

Box plots of columns in a matrix
quantro-class

quantro
quantroPlot

Plot results from quantro function.
quantroPvalPerm

Accessors for the 'quantroPvalPerm' slot of a quantro object.