r4ss (version 1.11)

SS_profile: Run a likelihood profile in Stock Synthesis.

Description

Iteratively changes the control file using SS_changepars.

Usage

SS_profile(dir = "C:/myfiles/mymodels/myrun/",
  masterctlfile = "control.ss_new", newctlfile = "control_modified.ss",
  linenum = NULL, string = NULL, profilevec = NULL,
  command = "SS3 -nox", model = "ss3", systemcmd = F,
  saveoutput = T, verbose = T)

Arguments

dir

Directory where input files and executable are located.

masterctlfile

Source control file. Default = "control.ss_new"

newctlfile

Destination for new control files (must match entry in starter file). Default = "control_modified.ss".

linenum

Optional line number of parameter to be changed. Default = NULL.

string

Optional string partially matching name of parameter to be changed. Default = NULL.

profilevec

Vector of values to profile over. Default = NULL.

command

Call to executable. Default = "SS3 -nox".

model

Name of executable. Default = "ss3".

systemcmd

Should R call SS using "system" function intead of "shell". This may be required when running R in Emacs. Default = F.

saveoutput

Copy output .SSO files to unique names. Default = T.

verbose

Controls amount of info output to command line. Default = T.

See Also

SS_changepars, SS_parlines